Gm43514 Gene Detail

Summary

• Symbol
  Gm43514
• Name
  predicted gene 43514

• Feature Type
  lncRNA gene
• IDs
  MGI:5663651
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:100968196-100968619 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663651	lncRNA gene	Chr5:100968196-100968619 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037037	sense intronic lncRNA gene	Chr5:102332456-102332879 (-)
A/J	MGP_AJ_G0037025	sense intronic lncRNA gene	Chr5:98517672-98518097 (-)
AKR/J	MGP_AKRJ_G0036973	sense intronic lncRNA gene	Chr5:101757103-101757528 (-)
BALB/cJ	MGP_BALBcJ_G0037016	sense intronic lncRNA gene	Chr5:99545828-99546252 (-)
C3H/HeJ	MGP_C3HHeJ_G0036703	sense intronic lncRNA gene	Chr5:102105645-102106068 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037529	sense intronic lncRNA gene	Chr5:106582649-106583072 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034580	sense intronic lncRNA gene	Chr5:93760388-93760802 (-)
CAST/EiJ	MGP_CASTEiJ_G0035891	sense intronic lncRNA gene	Chr5:100771451-100771883 (-)
CBA/J	MGP_CBAJ_G0036678	sense intronic lncRNA gene	Chr5:110279053-110279476 (-)
DBA/2J	MGP_DBA2J_G0036853	sense intronic lncRNA gene	Chr5:98707890-98708313 (-)
FVB/NJ	MGP_FVBNJ_G0036803	sense intronic lncRNA gene	Chr5:97509016-97509438 (-)
LP/J	MGP_LPJ_G0036900	sense intronic lncRNA gene	Chr5:102944666-102945089 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036810	sense intronic lncRNA gene	Chr5:115342471-115342894 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037646	sense intronic lncRNA gene	Chr5:101241568-101241986 (-)
PWK/PhJ	MGP_PWKPhJ_G0035583	sense intronic lncRNA gene	Chr5:97142847-97143267 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035392	sense intronic lncRNA gene	Chr5:98911091-98911518 (-)
WSB/EiJ	MGP_WSBEiJ_G0036091	sense intronic lncRNA gene	Chr5:101576651-101577070 (-)

Homology

• Gene Tree
  Gm43514
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105755 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105755	Ensembl Gene Model | MGI Sequence Detail	424	C57BL/6J
transcript	ENSMUST00000198852	Ensembl | MGI Sequence Detail	424	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43514:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52120	Chr5:100968218-100968221 (-)	399 bp