Gm43566 Gene Detail

Summary

• Symbol
  Gm43566
• Name
  predicted gene 43566

• Feature Type
  lncRNA gene
• IDs
  MGI:5663703
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:23879737-23880544 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663703	lncRNA gene	Chr5:23879737-23880544 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037027	sense intronic lncRNA gene	Chr5:21340197-21341004 (-)
A/J	MGP_AJ_G0037015	sense intronic lncRNA gene	Chr5:20643089-20643896 (-)
AKR/J	MGP_AKRJ_G0036963	sense intronic lncRNA gene	Chr5:21458798-21459605 (-)
BALB/cJ	MGP_BALBcJ_G0037006	sense intronic lncRNA gene	Chr5:21133751-21134558 (-)
C3H/HeJ	MGP_C3HHeJ_G0036693	sense intronic lncRNA gene	Chr5:21544142-21544949 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037519	sense intronic lncRNA gene	Chr5:22816886-22817693 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034570	sense intronic lncRNA gene	Chr5:18600879-18601681 (-)
CAST/EiJ	MGP_CASTEiJ_G0035881	sense intronic lncRNA gene	Chr5:20743860-20744667 (-)
CBA/J	MGP_CBAJ_G0036668	sense intronic lncRNA gene	Chr5:23142895-23143702 (-)
DBA/2J	MGP_DBA2J_G0036843	sense intronic lncRNA gene	Chr5:20905278-20906092 (-)
FVB/NJ	MGP_FVBNJ_G0036793	sense intronic lncRNA gene	Chr5:20303270-20304077 (-)
LP/J	MGP_LPJ_G0036890	sense intronic lncRNA gene	Chr5:21719792-21720599 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036800	sense intronic lncRNA gene	Chr5:24321023-24321830 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037636	sense intronic lncRNA gene	Chr5:21046405-21047219 (-)
PWK/PhJ	MGP_PWKPhJ_G0035573	sense intronic lncRNA gene	Chr5:19995534-19996341 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035382	sense intronic lncRNA gene	Chr5:20445371-20446189 (-)
WSB/EiJ	MGP_WSBEiJ_G0036081	sense intronic lncRNA gene	Chr5:21151923-21152737 (-)

Homology

• Gene Tree
  Gm43566
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105565 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105565	Ensembl Gene Model | MGI Sequence Detail	808	C57BL/6J
transcript	ENSMUST00000196851	Ensembl | MGI Sequence Detail	808	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43566:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50287	Chr5:23881432-23881487 (-)	-916 bp
Tssr50286	Chr5:23880939-23880995 (-)	-423 bp
Tssr50285	Chr5:23880925-23880936 (-)	-387 bp
Tssr50284	Chr5:23880812-23880836 (-)	-280 bp
Tssr50283	Chr5:23880787-23880800 (-)	-250 bp