Gm43571 Gene Detail

Summary

• Symbol
  Gm43571
• Name
  predicted gene 43571

• Feature Type
  unclassified gene
• IDs
  MGI:5663708
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:121853172-121856269 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663708	unclassified gene	Chr5:121853172-121856269 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001740	unclassified gene	Chr5:125275448-125278546 (+)
A/J	MGP_AJ_G0001717	unclassified gene	Chr5:120124761-120127860 (+)
AKR/J	MGP_AKRJ_G0001704	unclassified gene	Chr5:123973033-123976131 (+)
BALB/cJ	MGP_BALBcJ_G0001714	unclassified gene	Chr5:121460762-121463861 (+)
C3H/HeJ	MGP_C3HHeJ_G0001692	unclassified gene	Chr5:124562495-124565582 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001834	unclassified gene	Chr5:130043630-130046724 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001505	unclassified gene	Chr5:114744851-114747985 (+)
CAST/EiJ	MGP_CASTEiJ_G0001664	unclassified gene	Chr5:123656613-123659733 (+)
CBA/J	MGP_CBAJ_G0001684	unclassified gene	Chr5:135158425-135161512 (+)
DBA/2J	MGP_DBA2J_G0001688	unclassified gene	Chr5:120176836-120179923 (+)
FVB/NJ	MGP_FVBNJ_G0001696	unclassified gene	Chr5:119131826-119134910 (+)
LP/J	MGP_LPJ_G0001743	unclassified gene	Chr5:125821958-125825051 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001677	unclassified gene	Chr5:138999486-139002573 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001824	unclassified gene	Chr5:123522990-123526074 (+)
PWK/PhJ	MGP_PWKPhJ_G0001623	unclassified gene	Chr5:118921480-118924630 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0001684	unclassified gene	Chr5:124199764-124202855 (+)

Homology

• Gene Tree
  Gm43571
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000106110 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106110	Ensembl Gene Model | MGI Sequence Detail	3098	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48596	Chr5:121852238-121852243 (+)	-931 bp
Tssr48597	Chr5:121853190-121853194 (+)	20 bp