Gm43800 Gene Detail

Summary

• Symbol
  Gm43800
• Name
  predicted gene 43800

• Feature Type
  unclassified gene
• IDs
  MGI:5663937
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:31265898-31268628 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663937	unclassified gene	Chr6:31265898-31268628 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001881	unclassified gene	Chr6:29200936-29203664 (+)
A/J	MGP_AJ_G0001858	unclassified gene	Chr6:27970543-27973273 (+)
AKR/J	MGP_AKRJ_G0001845	unclassified gene	Chr6:28901412-28904140 (+)
BALB/cJ	MGP_BALBcJ_G0001855	unclassified gene	Chr6:28092923-28095655 (+)
C3H/HeJ	MGP_C3HHeJ_G0001832	unclassified gene	Chr6:28915072-28917802 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001976	unclassified gene	Chr6:30026661-30030716 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001634	unclassified gene	Chr6:26133376-26136104 (+)
CAST/EiJ	MGP_CASTEiJ_G0001801	unclassified gene	Chr6:28691838-28694565 (+)
CBA/J	MGP_CBAJ_G0001825	unclassified gene	Chr6:31197410-31200139 (+)
DBA/2J	MGP_DBA2J_G0001829	unclassified gene	Chr6:27873064-27875799 (+)
FVB/NJ	MGP_FVBNJ_G0001837	unclassified gene	Chr6:27665262-27667995 (+)
LP/J	MGP_LPJ_G0001884	unclassified gene	Chr6:29390853-29393588 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001816	unclassified gene	Chr6:33590261-33592993 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001966	unclassified gene	Chr6:28800721-28803451 (+)
PWK/PhJ	MGP_PWKPhJ_G0001762	unclassified gene	Chr6:27452419-27455145 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001727	unclassified gene	Chr6:28481450-28484172 (+)
WSB/EiJ	MGP_WSBEiJ_G0001825	unclassified gene	Chr6:28721039-28724532 (+)

Homology

• Gene Tree
  Gm43800
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106867 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106867	Ensembl Gene Model | MGI Sequence Detail	2731	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43800:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55463	Chr6:31265923-31265935 (+)	31 bp