Gm43809 Gene Detail

Summary

• Symbol
  Gm43809
• Name
  predicted gene 43809

• Feature Type
  lncRNA gene
• IDs
  MGI:5663946
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:31754282-31859316 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  2731 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663946	lncRNA gene	Chr5:31754282-31859316 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015594	unclassified non-coding RNA gene	Chr5:29626975-29737518 (+)
A/J	MGP_AJ_G0015570	unclassified non-coding RNA gene	Chr5:28670416-28775961 (+)
AKR/J	MGP_AKRJ_G0015534	unclassified non-coding RNA gene	Chr5:29821307-29930793 (+)
BALB/cJ	MGP_BALBcJ_G0015532	unclassified non-coding RNA gene	Chr5:29201068-29305980 (+)
C3H/HeJ	MGP_C3HHeJ_G0015354	unclassified non-coding RNA gene	Chr5:29844097-29950688 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015986	unclassified non-coding RNA gene	Chr5:31446002-31549722 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013721	unclassified non-coding RNA gene	Chr5:26279427-26393495 (+)
CAST/EiJ	MGP_CASTEiJ_G0014910	unclassified non-coding RNA gene	Chr5:28877767-28997441 (+)
CBA/J	MGP_CBAJ_G0015335	unclassified non-coding RNA gene	Chr5:32082485-32203170 (+)
DBA/2J	MGP_DBA2J_G0015429	unclassified non-coding RNA gene	Chr5:28830903-28953658 (+)
FVB/NJ	MGP_FVBNJ_G0015436	unclassified non-coding RNA gene	Chr5:28251482-28357356 (+)
LP/J	MGP_LPJ_G0015510	unclassified non-coding RNA gene	Chr5:30073065-30181947 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015459	unclassified non-coding RNA gene	Chr5:32910876-33019287 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016028	unclassified non-coding RNA gene	Chr5:29319730-29426569 (+)
PWK/PhJ	MGP_PWKPhJ_G0014695	unclassified non-coding RNA gene	Chr5:27990367-28098328 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014483	unclassified non-coding RNA gene	Chr5:28786765-28898577 (+)
WSB/EiJ	MGP_WSBEiJ_G0015014	unclassified non-coding RNA gene	Chr5:29390705-29501937 (+)

Homology

• Gene Tree
  Gm43809
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105617 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105617	Ensembl Gene Model | MGI Sequence Detail	105035	C57BL/6J
transcript	ENSMUST00000200694	Ensembl | MGI Sequence Detail	338	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm43809:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45719	Chr5:31754209-31754283 (+)	-36 bp