Gm43820 Gene Detail

Summary

• Symbol
  Gm43820
• Name
  predicted gene 43820

• Feature Type
  unclassified gene
• IDs
  MGI:5663957
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:37698756-37702101 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663957	unclassified gene	Chr3:37698756-37702101 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001102	unclassified gene	Chr3:35509251-35512705 (+)
A/J	MGP_AJ_G0001081	unclassified gene	Chr3:34789175-34792649 (+)
AKR/J	MGP_AKRJ_G0001067	unclassified gene	Chr3:35445739-35449151 (+)
BALB/cJ	MGP_BALBcJ_G0001074	unclassified gene	Chr3:34546014-34549358 (+)
C3H/HeJ	MGP_C3HHeJ_G0001055	unclassified gene	Chr3:35496589-35500063 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001190	unclassified gene	Chr3:37146698-37150043 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000912	unclassified gene	Chr3:32479487-32483230 (+)
CAST/EiJ	MGP_CASTEiJ_G0001041	unclassified gene	Chr3:35392009-35395403 (+)
CBA/J	MGP_CBAJ_G0001046	unclassified gene	Chr3:38149813-38153287 (+)
DBA/2J	MGP_DBA2J_G0001050	unclassified gene	Chr3:34232758-34236171 (+)
FVB/NJ	MGP_FVBNJ_G0001061	unclassified gene	Chr3:33674894-33678238 (+)
LP/J	MGP_LPJ_G0001110	unclassified gene	Chr3:36295469-36298951 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001053	unclassified gene	Chr3:40638144-40641653 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001180	unclassified gene	Chr3:35298415-35301870 (+)
PWK/PhJ	MGP_PWKPhJ_G0000998	unclassified gene	Chr3:33924171-33927535 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000974	unclassified gene	Chr3:34663904-34667477 (+)
WSB/EiJ	MGP_WSBEiJ_G0001054	unclassified gene	Chr3:35316533-35320007 (+)

Homology

• Gene Tree
  Gm43820
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106062 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106062	Ensembl Gene Model | MGI Sequence Detail	3346	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43820:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28913	Chr3:37697415-37697429 (+)	-1,334 bp
Tssr28914	Chr3:37697873-37697894 (+)	-872 bp
Tssr28915	Chr3:37698176-37698185 (+)	-575 bp
Tssr28916	Chr3:37698281-37698293 (+)	-469 bp
Tssr28917	Chr3:37698968-37698972 (+)	214 bp