Gm43914 Gene Detail

Summary

• Symbol
  Gm43914
• Name
  predicted gene, 43914

• Feature Type
  lncRNA gene
• IDs
  MGI:5690306
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:129395142-129395735 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690306	lncRNA gene	Chr6:129395142-129395735 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037067	sense intronic lncRNA gene	Chr6:133089424-133090017 (+)
A/J	MGP_AJ_G0037055	sense intronic lncRNA gene	Chr6:127993447-127994040 (+)
AKR/J	MGP_AKRJ_G0037003	sense intronic lncRNA gene	Chr6:131493475-131494068 (+)
BALB/cJ	MGP_BALBcJ_G0037046	sense intronic lncRNA gene	Chr6:127640648-127641241 (+)
C3H/HeJ	MGP_C3HHeJ_G0036733	sense intronic lncRNA gene	Chr6:131686900-131687493 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037558	sense intronic lncRNA gene	Chr6:136584409-136585002 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034603	sense intronic lncRNA gene	Chr6:126319174-126319767 (+)
CAST/EiJ	MGP_CASTEiJ_G0035920	sense intronic lncRNA gene	Chr6:131920867-131921460 (+)
CBA/J	MGP_CBAJ_G0036708	sense intronic lncRNA gene	Chr6:141961670-141962263 (+)
DBA/2J	MGP_DBA2J_G0036883	sense intronic lncRNA gene	Chr6:126946058-126946651 (+)
FVB/NJ	MGP_FVBNJ_G0036833	sense intronic lncRNA gene	Chr6:125828902-125829493 (+)
LP/J	MGP_LPJ_G0036930	sense intronic lncRNA gene	Chr6:133306973-133307566 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036840	sense intronic lncRNA gene	Chr6:145804590-145805182 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037676	sense intronic lncRNA gene	Chr6:131553986-131554578 (+)
PWK/PhJ	MGP_PWKPhJ_G0035613	sense intronic lncRNA gene	Chr6:125225803-125226395 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035422	sense intronic lncRNA gene	Chr6:129574318-129574911 (+)
WSB/EiJ	MGP_WSBEiJ_G0036121	sense intronic lncRNA gene	Chr6:131978679-131979272 (+)

Homology

• Gene Tree
  Gm43914
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107792 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107792	Ensembl Gene Model | MGI Sequence Detail	594	C57BL/6J
transcript	ENSMUST00000203592	Ensembl | MGI Sequence Detail	594	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm43914:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59166	Chr6:129393706-129393731 (+)	-1,423 bp