Gm43955 Pseudogene Detail

Summary

• Symbol
  Gm43955
• Name
  predicted gene, 43955

• Feature Type
  pseudogene
• IDs
  MGI:5690347
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:85073909-85074050 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690347	pseudogene	Chr6:85073909-85074050 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013582	pseudogene	Chr6:86209868-86210009 (+)
A/J	MGP_AJ_G0013562	pseudogene	Chr6:82919097-82919238 (+)
AKR/J	MGP_AKRJ_G0013524	pseudogene	Chr6:85324421-85324562 (+)
BALB/cJ	MGP_BALBcJ_G0013542	pseudogene	Chr6:82938110-82938251 (+)
C3H/HeJ	MGP_C3HHeJ_G0013394	pseudogene	Chr6:99107970-99108111 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013930	pseudogene	Chr6:88588076-88588217 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013084	pseudogene	Chr6:85347773-85347914 (+)
CBA/J	MGP_CBAJ_G0013362	pseudogene	Chr6:92078961-92079102 (+)
DBA/2J	MGP_DBA2J_G0013442	pseudogene	Chr6:82223026-82223167 (+)
FVB/NJ	MGP_FVBNJ_G0013442	pseudogene	Chr6:81426571-81426712 (+)
LP/J	MGP_LPJ_G0013517	pseudogene	Chr6:86202086-86202227 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013454	pseudogene	Chr6:96285043-96285184 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013921	pseudogene	Chr6:85145036-85145177 (+)
PWK/PhJ	MGP_PWKPhJ_G0012890	pseudogene	Chr6:81158904-81159045 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012670	pseudogene	Chr6:83995358-83995499 (+)
WSB/EiJ	MGP_WSBEiJ_G0013133	pseudogene	Chr6:85579798-85579939 (+)

Homology

• Gene Tree
  Gm43955
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43955
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107536 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107536	Ensembl Gene Model | MGI Sequence Detail	142	C57BL/6J
transcript	ENSMUST00000204332	Ensembl | MGI Sequence Detail	142	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48