Gm44001 Gene Detail

Summary

• Symbol
  Gm44001
• Name
  predicted gene, 44001

• Feature Type
  unclassified gene
• IDs
  MGI:5690393
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:88779225-88782997 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690393	unclassified gene	Chr6:88779225-88782997 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002008	unclassified gene	Chr6:90216000-90219770 (+)
A/J	MGP_AJ_G0001984	unclassified gene	Chr6:86747220-86751041 (+)
AKR/J	MGP_AKRJ_G0001972	unclassified gene	Chr6:89224642-89228414 (+)
BALB/cJ	MGP_BALBcJ_G0001981	unclassified gene	Chr6:86734784-86738548 (+)
C3H/HeJ	MGP_C3HHeJ_G0001944	unclassified gene	Chr6:95213999-95217761 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002103	unclassified gene	Chr6:92630639-92634407 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0001925	unclassified gene	Chr6:89341759-89345719 (+)
CBA/J	MGP_CBAJ_G0001952	unclassified gene	Chr6:96175868-96179627 (+)
DBA/2J	MGP_DBA2J_G0001956	unclassified gene	Chr6:86026589-86030353 (+)
FVB/NJ	MGP_FVBNJ_G0001964	unclassified gene	Chr6:85219729-85223499 (+)
LP/J	MGP_LPJ_G0002010	unclassified gene	Chr6:90239532-90243296 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001941	unclassified gene	Chr6:100281636-100285402 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002092	unclassified gene	Chr6:89088423-89092192 (+)
PWK/PhJ	MGP_PWKPhJ_G0001889	unclassified gene	Chr6:85008544-85012551 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001850	unclassified gene	Chr6:87896479-87900526 (+)
WSB/EiJ	MGP_WSBEiJ_G0001951	unclassified gene	Chr6:89542133-89545900 (+)

Homology

• Gene Tree
  Gm44001
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000107966 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107966	Ensembl Gene Model | MGI Sequence Detail	3773	C57BL/6J

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44001:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1931	Chr6:88779710-88779713 (+)	487 bp