Gm44071 Gene Detail

Summary

• Symbol
  Gm44071
• Name
  predicted gene, 44071

• Feature Type
  lncRNA gene
• IDs
  MGI:5690463
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:63301656-63305425 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  276 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690463	lncRNA gene	Chr6:63301656-63305425 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004281	antisense lncRNA gene	Chr6:63168360-63172069 (-)
A/J	MGP_AJ_G0004259	antisense lncRNA gene	Chr6:60366741-60369905 (-)
AKR/J	MGP_AKRJ_G0004240	antisense lncRNA gene	Chr6:62347998-62353027 (-)
BALB/cJ	MGP_BALBcJ_G0004246	antisense lncRNA gene	Chr6:60825922-60829051 (-)
C3H/HeJ	MGP_C3HHeJ_G0004259	antisense lncRNA gene	Chr6:121880137-121883083 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004395	antisense lncRNA gene	Chr6:64594604-64599641 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003868	antisense lncRNA gene	Chr6:57789199-57791930 (-)
CAST/EiJ	MGP_CASTEiJ_G0004156	antisense lncRNA gene	Chr6:62564512-62567784 (-)
CBA/J	MGP_CBAJ_G0004188	antisense lncRNA gene	Chr6:67277767-67282000 (-)
DBA/2J	MGP_DBA2J_G0004204	antisense lncRNA gene	Chr6:60113478-60117859 (-)
FVB/NJ	MGP_FVBNJ_G0004219	antisense lncRNA gene	Chr6:59657565-59660528 (-)
LP/J	MGP_LPJ_G0004282	antisense lncRNA gene	Chr6:63118755-63121633 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004210	antisense lncRNA gene	Chr6:70745799-70749804 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004392	antisense lncRNA gene	Chr6:62279779-62283766 (-)
PWK/PhJ	MGP_PWKPhJ_G0004109	antisense lncRNA gene	Chr6:59275870-59279237 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004053	antisense lncRNA gene	Chr6:61767442-61774909 (-)
WSB/EiJ	MGP_WSBEiJ_G0004192	antisense lncRNA gene	Chr6:62593419-62597275 (-)

Homology

• Gene Tree
  Gm44071
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107525 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107525	Ensembl Gene Model | MGI Sequence Detail	3770	C57BL/6J
transcript	ENSMUST00000204180	Ensembl | MGI Sequence Detail	448	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44071:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61204	Chr6:63305420-63305433 (-)	-2 bp