Gm44110 Gene Detail

Summary

• Symbol
  Gm44110
• Name
  predicted gene, 44110

• Feature Type
  lncRNA gene
• IDs
  MGI:5690502
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:71315870-71316519 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690502	lncRNA gene	Chr6:71315870-71316519 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006984	lincRNA gene	Chr6:71811759-71812408 (-)
A/J	MGP_AJ_G0006980	lincRNA gene	Chr6:69042226-69050332 (-)
AKR/J	MGP_AKRJ_G0006948	lincRNA gene	Chr6:71031864-71032513 (-)
BALB/cJ	MGP_BALBcJ_G0006956	lincRNA gene	Chr6:69082117-69082766 (-)
C3H/HeJ	MGP_C3HHeJ_G0006969	lincRNA gene	Chr6:113215606-113216255 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007119	lincRNA gene	Chr6:73704496-73705145 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006361	lincRNA gene	Chr6:68231877-68232520 (-)
CAST/EiJ	MGP_CASTEiJ_G0006815	lincRNA gene	Chr6:70893137-70893784 (-)
CBA/J	MGP_CBAJ_G0006881	lincRNA gene	Chr6:76625127-76625776 (-)
DBA/2J	MGP_DBA2J_G0006901	lincRNA gene	Chr6:68421049-68421698 (-)
FVB/NJ	MGP_FVBNJ_G0006925	lincRNA gene	Chr6:67792366-67793015 (-)
LP/J	MGP_LPJ_G0006985	lincRNA gene	Chr6:71738506-71739155 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006905	lincRNA gene	Chr6:80120284-80120933 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007124	lincRNA gene	Chr6:70878312-70878961 (-)
PWK/PhJ	MGP_PWKPhJ_G0006753	lincRNA gene	Chr6:67293799-67294448 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006663	lincRNA gene	Chr6:69583844-69584491 (-)
WSB/EiJ	MGP_WSBEiJ_G0006870	lincRNA gene	Chr6:71218166-71218815 (-)

Homology

• Gene Tree
  Gm44110
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107855 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107855	Ensembl Gene Model | MGI Sequence Detail	650	C57BL/6J
transcript	ENSMUST00000203871	Ensembl | MGI Sequence Detail	475	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44110:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61355	Chr6:71318290-71318301 (-)	-1,777 bp
Tssr61354	Chr6:71318277-71318287 (-)	-1,763 bp
Tssr61353	Chr6:71318214-71318252 (-)	-1,714 bp