Gm44148 Gene Detail

Summary

• Symbol
  Gm44148
• Name
  predicted gene, 44148

• Feature Type
  lncRNA gene
• IDs
  MGI:5690540
  NCBI Gene: 115490371
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:121232133-121249681 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  563 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690540	lncRNA gene	Chr6:121226598-121249681 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007059	lincRNA gene	Chr6:124195267-124213649 (-)
A/J	MGP_AJ_G0007055	lincRNA gene	Chr6:119409264-119427489 (-)
AKR/J	MGP_AKRJ_G0007024	lincRNA gene	Chr6:122633114-122650590 (-)
BALB/cJ	MGP_BALBcJ_G0007030	lincRNA gene	Chr6:119177741-119195228 (-)
C3H/HeJ	MGP_C3HHeJ_G0006975	lincRNA gene	Chr6:122662797-122680172 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007196	lincRNA gene	Chr6:127372600-127390023 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006423	lincRNA gene	Chr6:116311638-116333466 (-)
CAST/EiJ	MGP_CASTEiJ_G0006886	lincRNA gene	Chr6:123107804-123126869 (-)
CBA/J	MGP_CBAJ_G0006955	lincRNA gene	Chr6:132430678-132450493 (-)
DBA/2J	MGP_DBA2J_G0006977	lincRNA gene	Chr6:118301398-118318958 (-)
FVB/NJ	MGP_FVBNJ_G0007001	lincRNA gene	Chr6:117445719-117463505 (-)
LP/J	MGP_LPJ_G0007062	lincRNA gene	Chr6:124185679-124205158 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006981	lincRNA gene	Chr6:136372330-136389795 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007201	lincRNA gene	Chr6:122667506-122687961 (-)
PWK/PhJ	MGP_PWKPhJ_G0006826	lincRNA gene	Chr6:117343573-117361228 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006736	lincRNA gene	Chr6:121408470-121425744 (-)
WSB/EiJ	MGP_WSBEiJ_G0006944	lincRNA gene	Chr6:122960891-122980494 (-)

Homology

• Gene Tree
  Gm44148
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000107736 (Evidence)
• NCBI Gene
  115490371

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107736	Ensembl Gene Model | MGI Sequence Detail	17549	C57BL/6J
transcript	ENSMUST00000203718	Ensembl | MGI Sequence Detail	382	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44148:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62811	Chr6:121249659-121249686 (-)	8 bp