Gm44174 Gene Detail

Summary

• Symbol
  Gm44174
• Name
  predicted gene, 44174

• Feature Type
  lncRNA gene
• IDs
  MGI:5690566
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr6:71329971-71350268 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  639 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690566	lncRNA gene	Chr6:71329971-71350268 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006985	lincRNA gene	Chr6:71828397-71849468 (+)
A/J	MGP_AJ_G0006981	lincRNA gene	Chr6:69064059-69084309 (+)
AKR/J	MGP_AKRJ_G0006949	lincRNA gene	Chr6:71045874-71066434 (+)
BALB/cJ	MGP_BALBcJ_G0006957	lincRNA gene	Chr6:69096468-69116686 (+)
C3H/HeJ	MGP_C3HHeJ_G0006967	lincRNA gene	Chr6:113180622-113202196 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007120	lincRNA gene	Chr6:73719884-73740127 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006362	lincRNA gene	Chr6:68245638-68266582 (+)
CAST/EiJ	MGP_CASTEiJ_G0006816	lincRNA gene	Chr6:70909351-70929959 (+)
CBA/J	MGP_CBAJ_G0006882	lincRNA gene	Chr6:76641893-76666192 (+)
DBA/2J	MGP_DBA2J_G0006902	lincRNA gene	Chr6:68435404-68460106 (+)
FVB/NJ	MGP_FVBNJ_G0006926	lincRNA gene	Chr6:67805941-67826183 (+)
LP/J	MGP_LPJ_G0006986	lincRNA gene	Chr6:71755075-71775321 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006906	lincRNA gene	Chr6:80136483-80157041 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007125	lincRNA gene	Chr6:70893535-70913778 (+)
PWK/PhJ	MGP_PWKPhJ_G0006754	lincRNA gene	Chr6:67308102-67328821 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006664	lincRNA gene	Chr6:69598306-69618943 (+)
WSB/EiJ	MGP_WSBEiJ_G0006871	lincRNA gene	Chr6:71232194-71252441 (+)

Homology

• Gene Tree
  Gm44174
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108289 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108289	Ensembl Gene Model | MGI Sequence Detail	20298	C57BL/6J
transcript	ENSMUST00000246337	Ensembl | MGI Sequence Detail	1652	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44174:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57006	Chr6:71329922-71329931 (+)	-44 bp
Tssr57007	Chr6:71329952-71329963 (+)	-13 bp
Tssr57008	Chr6:71329965-71329986 (+)	5 bp
Tssr57009	Chr6:71330003-71330037 (+)	49 bp
Tssr57010	Chr6:71330888-71330900 (+)	923 bp
Tssr57011	Chr6:71330959-71330962 (+)	990 bp
Tssr1882	Chr6:71337936-71337946 (+)	7,970 bp
Tssr57012	Chr6:71337959-71337972 (+)	7,995 bp
Tssr57013	Chr6:71346682-71346694 (+)	16,717 bp
Tssr57014	Chr6:71346714-71346738 (+)	16,755 bp
Tssr57015	Chr6:71347039-71347048 (+)	17,073 bp
Tssr1883	Chr6:71348291-71348307 (+)	18,328 bp
Tssr57016	Chr6:71348339-71348353 (+)	18,375 bp
Tssr57017	Chr6:71348392-71348404 (+)	18,427 bp