Gm44238 Gene Detail

Summary

• Symbol
  Gm44238
• Name
  predicted gene, 44238

• Feature Type
  lncRNA gene
• IDs
  MGI:5690630
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:134905955-134907075 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690630	lncRNA gene	Chr6:134905955-134907075 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007079	lincRNA gene	Chr6:139233059-139234184 (-)
A/J	MGP_AJ_G0007076	lincRNA gene	Chr6:133765265-133766389 (-)
AKR/J	MGP_AKRJ_G0007044	lincRNA gene	Chr6:137823082-137824206 (-)
BALB/cJ	MGP_BALBcJ_G0007051	lincRNA gene	Chr6:133579046-133580171 (-)
C3H/HeJ	MGP_C3HHeJ_G0006996	lincRNA gene	Chr6:137868098-137869222 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0006442	lincRNA gene	Chr6:132907958-132909071 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0006976	lincRNA gene	Chr6:148352461-148353585 (-)
DBA/2J	MGP_DBA2J_G0006998	lincRNA gene	Chr6:132615675-132616799 (-)
FVB/NJ	MGP_FVBNJ_G0007021	lincRNA gene	Chr6:131528683-131530226 (-)
LP/J	MGP_LPJ_G0007082	lincRNA gene	Chr6:139336316-139337441 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007001	lincRNA gene	Chr6:152386638-152387762 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007223	lincRNA gene	Chr6:137561860-137562986 (-)
PWK/PhJ	MGP_PWKPhJ_G0006847	lincRNA gene	Chr6:131106704-131107825 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006757	lincRNA gene	Chr6:135740021-135741147 (-)
WSB/EiJ	MGP_WSBEiJ_G0006963	lincRNA gene	Chr6:138193718-138196625 (-)

Homology

• Gene Tree
  Gm44238
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000107730 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107730	Ensembl Gene Model | MGI Sequence Detail	1121	C57BL/6J
transcript	ENSMUST00000203300	Ensembl | MGI Sequence Detail	353	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;