Gm44284 Gene Detail

Summary

• Symbol
  Gm44284
• Name
  predicted gene, 44284

• Feature Type
  lncRNA gene
• IDs
  MGI:5690676
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr6:42305647-42327796 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  709 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690676	lncRNA gene	Chr6:42305647-42327796 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004262	antisense lncRNA gene	Chr6:40843826-40867447 (-)
A/J	MGP_AJ_G0004240	antisense lncRNA gene	Chr6:39060419-39081231 (-)
AKR/J	MGP_AKRJ_G0004221	antisense lncRNA gene	Chr6:40322908-40344061 (-)
BALB/cJ	MGP_BALBcJ_G0004227	antisense lncRNA gene	Chr6:39305615-39326670 (-)
C3H/HeJ	MGP_C3HHeJ_G0004175	antisense lncRNA gene	Chr6:40356227-40379035 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004376	antisense lncRNA gene	Chr6:41862620-41890826 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003849	antisense lncRNA gene	Chr6:36941033-36962567 (-)
CAST/EiJ	MGP_CASTEiJ_G0004137	antisense lncRNA gene	Chr6:40192176-40213261 (-)
CBA/J	MGP_CBAJ_G0004169	antisense lncRNA gene	Chr6:43560508-43587063 (-)
DBA/2J	MGP_DBA2J_G0004185	antisense lncRNA gene	Chr6:38909383-38930625 (-)
FVB/NJ	MGP_FVBNJ_G0004201	antisense lncRNA gene	Chr6:38657087-38678545 (-)
LP/J	MGP_LPJ_G0004263	antisense lncRNA gene	Chr6:40804587-40827323 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004191	antisense lncRNA gene	Chr6:45840377-45862568 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004373	antisense lncRNA gene	Chr6:40296037-40317864 (-)
PWK/PhJ	MGP_PWKPhJ_G0004090	antisense lncRNA gene	Chr6:38472771-38493577 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004034	antisense lncRNA gene	Chr6:39858582-39879739 (-)
WSB/EiJ	MGP_WSBEiJ_G0004173	antisense lncRNA gene	Chr6:40286446-40307604 (-)

Homology

• Gene Tree
  Gm44284
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108033 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108033	Ensembl Gene Model | MGI Sequence Detail	22150	C57BL/6J
transcript	ENSMUST00000203836	Ensembl | MGI Sequence Detail	3444	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44284:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60615	Chr6:42328527-42328587 (-)	-761 bp
Tssr60614	Chr6:42328461-42328500 (-)	-685 bp
Tssr60613	Chr6:42328266-42328296 (-)	-485 bp
Tssr60612	Chr6:42328239-42328256 (-)	-452 bp
Tssr60611	Chr6:42328225-42328234 (-)	-434 bp
Tssr60610	Chr6:42327381-42327410 (-)	400 bp
Tssr60609	Chr6:42326626-42326651 (-)	1,157 bp
Tssr60608	Chr6:42326605-42326614 (-)	1,186 bp
Tssr60607	Chr6:42317166-42317173 (-)	10,626 bp