Gm44418 Gene Detail

Summary

• Symbol
  Gm44418
• Name
  predicted gene, 44418

• Feature Type
  lncRNA gene
• IDs
  MGI:5690810
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:87254727-87256732 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690810	lncRNA gene	Chr6:87254727-87256732 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004309	antisense lncRNA gene	Chr6:88624649-88626654 (+)
A/J	MGP_AJ_G0004287	antisense lncRNA gene	Chr6:85196680-85198685 (+)
AKR/J	MGP_AKRJ_G0004269	antisense lncRNA gene	Chr6:87665826-87667832 (+)
BALB/cJ	MGP_BALBcJ_G0004273	antisense lncRNA gene	Chr6:85199734-85201740 (+)
C3H/HeJ	MGP_C3HHeJ_G0004232	antisense lncRNA gene	Chr6:96810702-96812707 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004422	antisense lncRNA gene	Chr6:91005242-91007247 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003893	antisense lncRNA gene	Chr6:83378158-83380187 (+)
CAST/EiJ	MGP_CASTEiJ_G0004183	antisense lncRNA gene	Chr6:87733998-87736004 (+)
CBA/J	MGP_CBAJ_G0004215	antisense lncRNA gene	Chr6:94556142-94558147 (+)
DBA/2J	MGP_DBA2J_G0004231	antisense lncRNA gene	Chr6:84503357-84505362 (+)
FVB/NJ	MGP_FVBNJ_G0004247	antisense lncRNA gene	Chr6:83684385-83686390 (+)
LP/J	MGP_LPJ_G0004310	antisense lncRNA gene	Chr6:88638656-88640661 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004238	antisense lncRNA gene	Chr6:98669499-98671504 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004420	antisense lncRNA gene	Chr6:87508772-87510777 (+)
PWK/PhJ	MGP_PWKPhJ_G0004136	antisense lncRNA gene	Chr6:83465117-83467123 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004079	antisense lncRNA gene	Chr6:86326121-86328111 (+)
WSB/EiJ	MGP_WSBEiJ_G0004220	antisense lncRNA gene	Chr6:87965143-87967149 (+)

Homology

• Gene Tree
  Gm44418
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108006 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108006	Ensembl Gene Model | MGI Sequence Detail	2006	C57BL/6J
transcript	ENSMUST00000204219	Ensembl | MGI Sequence Detail	705	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44418:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57533	Chr6:87254683-87254712 (+)	-29 bp
Tssr57534	Chr6:87254720-87254732 (+)	-1 bp