Gm44540 Pseudogene Detail

Summary

• Symbol
  Gm44540
• Name
  predicted gene 44540

• Feature Type
  pseudogene
• IDs
  MGI:5753116
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:43043959-43044688 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753116	pseudogene	Chr7:43043959-43044688 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013893	pseudogene	Chr7:43403864-43404593 (+)
A/J	MGP_AJ_G0013913	pseudogene	Chr7:42521669-42522398 (+)
AKR/J	MGP_AKRJ_G0013847	pseudogene	Chr7:43890027-43890756 (+)
BALB/cJ	MGP_BALBcJ_G0013871	pseudogene	Chr7:42634115-42634844 (+)
C3H/HeJ	MGP_C3HHeJ_G0013704	pseudogene	Chr7:44384942-44385671 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014304	pseudogene	Chr7:45594350-45595079 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012156	pseudogene	Chr7:44641361-44642090 (+)
CAST/EiJ	MGP_CASTEiJ_G0013369	pseudogene	Chr7:35563835-35564564 (+)
CBA/J	MGP_CBAJ_G0013687	pseudogene	Chr7:47037051-47037780 (+)
DBA/2J	MGP_DBA2J_G0013767	pseudogene	Chr7:42320930-42321659 (+)
FVB/NJ	MGP_FVBNJ_G0013765	pseudogene	Chr7:42040019-42040748 (+)
LP/J	MGP_LPJ_G0013838	pseudogene	Chr7:44136441-44137170 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013790	pseudogene	Chr7:45992007-45992736 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014261	pseudogene	Chr7:43010779-43011508 (+)
PWK/PhJ	MGP_PWKPhJ_G0013181	pseudogene	Chr7:35756132-35756861 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012945	pseudogene	Chr7:31070777-31071493 (+)
WSB/EiJ	MGP_WSBEiJ_G0013429	pseudogene	Chr7:43560033-43560762 (+)

Homology

• Gene Tree
  Gm44540
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108775 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108775	Ensembl Gene Model | MGI Sequence Detail	730	C57BL/6J
transcript	ENSMUST00000205640	Ensembl | MGI Sequence Detail	354	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;