Gm44574 Gene Detail

Summary

• Symbol
  Gm44574
• Name
  predicted gene 44574

• Feature Type
  lncRNA gene
• IDs
  MGI:5753150
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:123125746-123150937 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  628 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753150	lncRNA gene	Chr5:123125746-123150937 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015611	unclassified non-coding RNA gene	Chr5:126666434-126691679 (-)
A/J	MGP_AJ_G0015587	unclassified non-coding RNA gene	Chr5:121407731-121433695 (-)
AKR/J	MGP_AKRJ_G0015551	unclassified non-coding RNA gene	Chr5:125325146-125349470 (-)
BALB/cJ	MGP_BALBcJ_G0015549	unclassified non-coding RNA gene	Chr5:122755692-122779673 (-)
C3H/HeJ	MGP_C3HHeJ_G0015371	unclassified non-coding RNA gene	Chr5:125947315-125972394 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016003	unclassified non-coding RNA gene	Chr5:131545335-131576804 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013738	unclassified non-coding RNA gene	Chr5:116008941-116032909 (-)
CAST/EiJ	MGP_CASTEiJ_G0014927	unclassified non-coding RNA gene	Chr5:125046215-125070019 (-)
CBA/J	MGP_CBAJ_G0015352	unclassified non-coding RNA gene	Chr5:136700803-136730917 (-)
DBA/2J	MGP_DBA2J_G0015446	unclassified non-coding RNA gene	Chr5:121467350-121491744 (-)
FVB/NJ	MGP_FVBNJ_G0015453	unclassified non-coding RNA gene	Chr5:120466934-120491966 (-)
LP/J	MGP_LPJ_G0015527	unclassified non-coding RNA gene	Chr5:127202808-127226818 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015476	unclassified non-coding RNA gene	Chr5:140380912-140406836 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016045	unclassified non-coding RNA gene	Chr5:124924637-124951361 (-)
PWK/PhJ	MGP_PWKPhJ_G0014712	unclassified non-coding RNA gene	Chr5:120253634-120278116 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014500	unclassified non-coding RNA gene	Chr5:122617873-122643947 (-)
WSB/EiJ	MGP_WSBEiJ_G0015031	unclassified non-coding RNA gene	Chr5:125592697-125618509 (-)

Homology

• Gene Tree
  Gm44574
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  31
• Gene trapped
  31
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105311 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105311	Ensembl Gene Model | MGI Sequence Detail	25192	C57BL/6J
transcript	ENSMUST00000172729	Ensembl | MGI Sequence Detail	390	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm44574:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53182	Chr5:123150939-123150943 (-)	-4 bp
Tssr53181	Chr5:123132504-123132518 (-)	18,426 bp