Gm44731 Gene Detail

Summary

• Symbol
  Gm44731
• Name
  predicted gene 44731

• Feature Type
  lncRNA gene
• IDs
  MGI:5753307
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:43241476-43242789 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753307	lncRNA gene	Chr6:43241476-43242789 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004264	antisense lncRNA gene	Chr6:41894060-41895373 (-)
A/J	MGP_AJ_G0004242	antisense lncRNA gene	Chr6:40048727-40050040 (-)
AKR/J	MGP_AKRJ_G0004223	antisense lncRNA gene	Chr6:41379039-41380352 (-)
BALB/cJ	MGP_BALBcJ_G0004229	antisense lncRNA gene	Chr6:40339566-40340879 (-)
C3H/HeJ	MGP_C3HHeJ_G0004177	antisense lncRNA gene	Chr6:41391618-41392931 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004378	antisense lncRNA gene	Chr6:42896174-42897487 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003851	antisense lncRNA gene	Chr6:37951717-37953023 (-)
CAST/EiJ	MGP_CASTEiJ_G0004139	antisense lncRNA gene	Chr6:41155964-41157257 (-)
CBA/J	MGP_CBAJ_G0004171	antisense lncRNA gene	Chr6:44641163-44642476 (-)
DBA/2J	MGP_DBA2J_G0004187	antisense lncRNA gene	Chr6:39924738-39926051 (-)
FVB/NJ	MGP_FVBNJ_G0004203	antisense lncRNA gene	Chr6:39640184-39641497 (-)
LP/J	MGP_LPJ_G0004265	antisense lncRNA gene	Chr6:41861453-41862768 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004193	antisense lncRNA gene	Chr6:46964020-46965333 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004375	antisense lncRNA gene	Chr6:41318478-41319791 (-)
PWK/PhJ	MGP_PWKPhJ_G0004092	antisense lncRNA gene	Chr6:39465562-39466881 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004036	antisense lncRNA gene	Chr6:40851972-40853286 (-)
WSB/EiJ	MGP_WSBEiJ_G0004175	antisense lncRNA gene	Chr6:41279643-41280942 (-)

Homology

• Gene Tree
  Gm44731
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108190 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108190	Ensembl Gene Model | MGI Sequence Detail	1314	C57BL/6J
transcript	ENSMUST00000203086	Ensembl | MGI Sequence Detail	542	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44731:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60679	Chr6:43243530-43243544 (-)	-748 bp