Gm44851 Gene Detail

Summary

• Symbol
  Gm44851
• Name
  predicted gene 44851

• Feature Type
  lncRNA gene
• IDs
  MGI:5753427
  NCBI Gene: 115486493
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:80054188-80056333 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753427	lncRNA gene	Chr7:80054017-80056333 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004472	antisense lncRNA gene	Chr7:82376920-82379228 (+)
A/J	MGP_AJ_G0004452	antisense lncRNA gene	Chr7:80447648-80449959 (+)
AKR/J	MGP_AKRJ_G0004435	antisense lncRNA gene	Chr7:82192497-82194808 (+)
BALB/cJ	MGP_BALBcJ_G0004437	antisense lncRNA gene	Chr7:80123134-80125445 (+)
C3H/HeJ	MGP_C3HHeJ_G0004386	antisense lncRNA gene	Chr7:82840663-82842971 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004588	antisense lncRNA gene	Chr7:85613933-85616241 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004042	antisense lncRNA gene	Chr7:82968198-82970507 (+)
CAST/EiJ	MGP_CASTEiJ_G0004346	antisense lncRNA gene	Chr7:73728876-73731217 (+)
CBA/J	MGP_CBAJ_G0004381	antisense lncRNA gene	Chr7:88453919-88456227 (+)
DBA/2J	MGP_DBA2J_G0004395	antisense lncRNA gene	Chr7:79005881-79008189 (+)
FVB/NJ	MGP_FVBNJ_G0004412	antisense lncRNA gene	Chr7:78920166-78922477 (+)
LP/J	MGP_LPJ_G0004476	antisense lncRNA gene	Chr7:83616531-83618839 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004402	antisense lncRNA gene	Chr7:88607620-88609928 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004586	antisense lncRNA gene	Chr7:81625877-81628188 (+)
PWK/PhJ	MGP_PWKPhJ_G0004299	antisense lncRNA gene	Chr7:72194476-72196805 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004240	antisense lncRNA gene	Chr7:68634491-68636825 (+)
WSB/EiJ	MGP_WSBEiJ_G0004385	antisense lncRNA gene	Chr7:81986605-81988913 (+)

Homology

• Gene Tree
  Gm44851
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000108436 (Evidence)
• NCBI Gene
  115486493

Representative Sequences			Length	Strain/Species
genomic	115486493	NCBI Gene Model | MGI Sequence Detail	2146	C57BL/6J
transcript	NR_169037	RefSeq | MGI Sequence Detail	2146	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44851:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67443	Chr7:80054186-80054193 (+)	2 bp
Tssr67444	Chr7:80055279-80055289 (+)	1,096 bp
Tssr67445	Chr7:80056310-80056321 (+)	2,128 bp