Gm44987 Gene Detail

Summary

• Symbol
  Gm44987
• Name
  predicted gene 44987

• Feature Type
  lncRNA gene
• IDs
  MGI:5753563
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:121580984-121588339 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753563	lncRNA gene	Chr7:121580984-121588339 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004501	antisense lncRNA gene	Chr7:126038906-126046262 (+)
A/J	MGP_AJ_G0004481	antisense lncRNA gene	Chr7:122774857-122783023 (+)
AKR/J	MGP_AKRJ_G0004464	antisense lncRNA gene	Chr7:125896834-125904021 (+)
BALB/cJ	MGP_BALBcJ_G0004466	antisense lncRNA gene	Chr7:122467789-122474832 (+)
C3H/HeJ	MGP_C3HHeJ_G0004415	antisense lncRNA gene	Chr7:125826194-125834236 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004616	antisense lncRNA gene	Chr7:131023978-131031330 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004071	antisense lncRNA gene	Chr7:124101350-124108980 (+)
CAST/EiJ	MGP_CASTEiJ_G0004375	antisense lncRNA gene	Chr7:117596380-117603741 (+)
CBA/J	MGP_CBAJ_G0004410	antisense lncRNA gene	Chr7:135402106-135409439 (+)
DBA/2J	MGP_DBA2J_G0004424	antisense lncRNA gene	Chr7:120782757-120790104 (+)
FVB/NJ	MGP_FVBNJ_G0004441	antisense lncRNA gene	Chr7:120633492-120640817 (+)
LP/J	MGP_LPJ_G0004505	antisense lncRNA gene	Chr7:127491052-127498377 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004430	antisense lncRNA gene	Chr7:136799018-136806346 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004615	antisense lncRNA gene	Chr7:124903149-124910489 (+)
PWK/PhJ	MGP_PWKPhJ_G0004328	antisense lncRNA gene	Chr7:113710119-113717611 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004269	antisense lncRNA gene	Chr7:111673285-111681355 (+)
WSB/EiJ	MGP_WSBEiJ_G0004414	antisense lncRNA gene	Chr7:125811283-125820316 (+)

Homology

• Gene Tree
  Gm44987
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108511 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108511	Ensembl Gene Model | MGI Sequence Detail	7356	C57BL/6J
transcript	ENSMUST00000206578	Ensembl | MGI Sequence Detail	750	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44987:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68851	Chr7:121580959-121580994 (+)	-7 bp