Gm45140 Gene Detail

Summary

• Symbol
  Gm45140
• Name
  predicted gene 45140

• Feature Type
  protein coding gene
• IDs
  MGI:5753716
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:87765843-87812777 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  1169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753716	protein coding gene	Chr6:87765843-87812777 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0030999	protein coding gene	Chr6:89153703-89208423 (-)
A/J	MGP_AJ_G0030965	protein coding gene	Chr6:85713208-85762481 (-)
AKR/J	MGP_AKRJ_G0030896	protein coding gene	Chr6:88192072-88238587 (-)
BALB/cJ	MGP_BALBcJ_G0030978	protein coding gene	Chr6:85708427-85755538 (-)
C3H/HeJ	MGP_C3HHeJ_G0030732	protein coding gene	Chr6:96230035-96279854 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0031435	protein coding gene	Chr6:91544984-91595022 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028618	protein coding gene	Chr6:83885934-83933639 (-)
CAST/EiJ	MGP_CASTEiJ_G0030087	protein coding gene	Chr6:88272562-88322643 (-)
CBA/J	MGP_CBAJ_G0030662	protein coding gene	Chr6:95089377-95143850 (-)
DBA/2J	MGP_DBA2J_G0030818	protein coding gene	Chr6:85013187-85060164 (-)
FVB/NJ	MGP_FVBNJ_G0030771	protein coding gene	Chr6:84199855-84250416 (-)
LP/J	MGP_LPJ_G0030895	protein coding gene	Chr6:89170937-89222239 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030804	protein coding gene	Chr6:99225715-99273598 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031462	protein coding gene	Chr6:88045182-88094164 (-)
PWK/PhJ	MGP_PWKPhJ_G0029802	protein coding gene	Chr6:83981097-84028613 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029630	protein coding gene	Chr6:86861081-86906900 (-)
WSB/EiJ	MGP_WSBEiJ_G0030168	protein coding gene	Chr6:88495116-88543928 (-)

Homology

• Gene Tree
  Gm45140
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  2

• Ensembl
  ENSMUSG00000107928 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107928	Ensembl Gene Model | MGI Sequence Detail	46935	C57BL/6J
transcript	ENSMUST00000204419	Ensembl | MGI Sequence Detail	5061	Not Applicable
polypeptide	ENSMUSP00000144743	Ensembl | MGI Sequence Detail	220	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR029012 Helix hairpin bin domain superfamily
  IPR027417 P-loop containing nucleoside triphosphate hydrolase
  IPR009360 Pre-mRNA-splicing factor Isy1
  IPR037200 Pre-mRNA-splicing factor Isy1 superfamily
  IPR050209 Rab GTPases family involved in membrane trafficking
  IPR001806 Small GTPase
  IPR005225 Small GTP-binding protein domain

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45140:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61942	Chr6:87803499-87803502 (-)	9,276 bp