Gm45916 Gene Detail

Summary

• Symbol
  Gm45916
• Name
  predicted gene, 45916

• Feature Type
  lncRNA gene
• IDs
  MGI:5825553
  NCBI Gene: 100503496
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:109330904-109344185 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  583 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825553	lncRNA gene	Chr11:109330904-109344185 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• NCBI Gene
  100503496

Representative Sequences			Length	Strain/Species
genomic	100503496	NCBI Gene Model | MGI Sequence Detail	13282	C57BL/6J
transcript	NR_040680	RefSeq | MGI Sequence Detail	1776	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm45916:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105678	Chr11:109330898-109330905 (+)	-2 bp
Tssr105679	Chr11:109330923-109330999 (+)	57 bp
Tssr105680	Chr11:109343557-109343575 (+)	12,662 bp