Gm45918 Gene Detail

Summary

• Symbol
  Gm45918
• Name
  predicted gene, 45918

• Feature Type
  lncRNA gene
• IDs
  MGI:5825555
  NCBI Gene: 105242408
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr19:21139295-21188061 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1893 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825555	lncRNA gene	Chr19:21139295-21188061 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  6

• NCBI Gene
  105242408

Representative Sequences			Length	Strain/Species
genomic	105242408	NCBI Gene Model | MGI Sequence Detail	48767	C57BL/6J
transcript	BC051529	GenBank | ENA | DDBJ | MGI Sequence Detail	1290	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm45918:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158574	Chr19:21152248-21152269 (-)	35,802 bp
Tssr158573	Chr19:21152236-21152247 (-)	35,819 bp
Tssr158572	Chr19:21152215-21152224 (-)	35,841 bp
Tssr158571	Chr19:21149852-21149878 (-)	38,196 bp
Tssr158570	Chr19:21148328-21148358 (-)	39,718 bp
Tssr158569	Chr19:21148313-21148320 (-)	39,744 bp
Tssr158568	Chr19:21148289-21148303 (-)	39,765 bp
Tssr158567	Chr19:21148228-21148233 (-)	39,830 bp