Gm45935 Gene Detail

Summary

• Symbol
  Gm45935
• Name
  predicted gene, 45935

• Feature Type
  protein coding gene
• IDs
  MGI:5825572
  NCBI Gene: 107303348
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr14:59618282-59678329 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1317 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825572	protein coding gene	Chr14:59618282-59678329 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  2
• UniProt
  1

• NCBI Gene
  107303348

Representative Sequences			Length	Strain/Species
genomic	107303348	NCBI Gene Model | MGI Sequence Detail	60048	C57BL/6J
transcript	NM_001320725	RefSeq | MGI Sequence Detail	3895	ZRU/MplStud
polypeptide	NP_001307654	RefSeq | MGI Sequence Detail	991	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• EC
  2.1.1.366
• InterPro Domains
  IPR016177 DNA-binding domain superfamily
  IPR034732 Extended PHD (ePHD) domain
  IPR051516 Histone-lysine N-methyltransferase SETDB
  IPR047232 Histone-lysine N-methyltransferase SETDB1/2-like, methyl-CpG binding domains
  IPR001739 Methyl-CpG DNA binding
  IPR007728 Pre-SET domain
  IPR001214 SET domain
  IPR046341 SET domain superfamily
  IPR001965 Zinc finger, PHD-type
  IPR013083 Zinc finger, RING/FYVE/PHD-type

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm45935:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129013	Chr14:59678760-59678766 (-)	-434 bp
Tssr129012	Chr14:59678758-59678759 (-)	-430 bp
Tssr129011	Chr14:59678751-59678756 (-)	-425 bp
Tssr129010	Chr14:59678552-59678557 (-)	-226 bp
Tssr129009	Chr14:59678537-59678546 (-)	-213 bp
Tssr129008	Chr14:59678228-59678336 (-)	47 bp
Tssr4441	Chr14:59656646-59656657 (-)	21,677 bp
Tssr129007	Chr14:59656518-59656548 (-)	21,796 bp
Tssr129006	Chr14:59649604-59649623 (-)	28,715 bp
Tssr129005	Chr14:59645206-59645211 (-)	33,120 bp
Tssr129004	Chr14:59634623-59634665 (-)	43,685 bp