Gm45968 Gene Detail

Summary

• Symbol
  Gm45968
• Name
  predicted gene, 45968

• Feature Type
  lncRNA gene
• IDs
  MGI:5825605
  NCBI Gene: 108167374
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr16:55241201-55402820 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  5529 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825605	lncRNA gene	Chr16:55241201-55402820 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  108167374

Representative Sequences			Length	Strain/Species
genomic	108167374	NCBI Gene Model | MGI Sequence Detail	161620	C57BL/6J
transcript	XR_001782016	RefSeq | MGI Sequence Detail	1042	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm45968:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141506	Chr16:55344144-55344147 (-)	58,674 bp
Tssr141505	Chr16:55344094-55344109 (-)	58,718 bp
Tssr141504	Chr16:55344043-55344064 (-)	58,766 bp
Tssr141503	Chr16:55344031-55344042 (-)	58,783 bp
Tssr141502	Chr16:55342665-55342674 (-)	60,150 bp