Gm46046 Gene Detail

Summary

• Symbol
  Gm46046
• Name
  predicted gene, 46046

• Feature Type
  lncRNA gene
• IDs
  MGI:5825683
  NCBI Gene: 108167541
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr8:84467915-84472274 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825683	lncRNA gene	Chr8:84467915-84472274 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  108167541

Representative Sequences			Length	Strain/Species
genomic	108167541	NCBI Gene Model | MGI Sequence Detail	4360	C57BL/6J
transcript	NR_168527	RefSeq | MGI Sequence Detail	500	ZRU/MplStud

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm46046:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78291	Chr8:84466966-84466985 (+)	-939 bp
Tssr78292	Chr8:84466992-84467007 (+)	-915 bp
Tssr2619	Chr8:84467019-84467030 (+)	-890 bp
Tssr78293	Chr8:84467110-84467148 (+)	-786 bp
Tssr78294	Chr8:84467193-84467203 (+)	-717 bp
Tssr78295	Chr8:84467244-84467249 (+)	-668 bp
Tssr78296	Chr8:84467264-84467268 (+)	-649 bp
Tssr2620	Chr8:84467905-84467926 (+)	1 bp
Tssr78297	Chr8:84468017-84468063 (+)	125 bp
Tssr2621	Chr8:84469184-84469194 (+)	1,274 bp