Gm46162 Gene Detail

Summary

• Symbol
  Gm46162
• Name
  predicted gene, 46162

• Feature Type
  lncRNA gene
• IDs
  MGI:5825799
  NCBI Gene: 108167732
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr1:151117352-151127075 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  394 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825799	lncRNA gene	Chr1:151117352-151127075 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  4

• NCBI Gene
  108167732

Representative Sequences			Length	Strain/Species
genomic	108167732	NCBI Gene Model | MGI Sequence Detail	9724	C57BL/6J
transcript	XR_001779476	RefSeq | MGI Sequence Detail	3360	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm46162:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14177	Chr1:151128560-151128603 (-)	-1,507 bp
Tssr14176	Chr1:151127759-151127763 (-)	-686 bp
Tssr14175	Chr1:151126591-151126618 (-)	470 bp
Tssr14174	Chr1:151126558-151126588 (-)	502 bp
Tssr14173	Chr1:151126538-151126552 (-)	530 bp
Tssr14172	Chr1:151126492-151126505 (-)	576 bp
Tssr14171	Chr1:151126473-151126478 (-)	599 bp
Tssr14170	Chr1:151125975-151125978 (-)	1,098 bp