Gm46289 Gene Detail

Summary

• Symbol
  Gm46289
• Name
  predicted gene, 46289

• Feature Type
  lncRNA gene
• IDs
  MGI:5825926
  NCBI Gene: 108167917
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:86481398-86489321 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825926	lncRNA gene	Chr11:86481398-86489321 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  108167917

Representative Sequences			Length	Strain/Species
genomic	108167917	NCBI Gene Model | MGI Sequence Detail	7924	C57BL/6J
transcript	AK132089	GenBank | ENA | DDBJ | MGI Sequence Detail	1664	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm46289:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103883	Chr11:86484086-86484097 (+)	2,694 bp
Tssr103884	Chr11:86484111-86484127 (+)	2,721 bp
Tssr3623	Chr11:86484133-86484142 (+)	2,740 bp