Gm46295 Gene Detail

Summary

• Symbol
  Gm46295
• Name
  predicted gene, 46295

• Feature Type
  lncRNA gene
• IDs
  MGI:5825932
  NCBI Gene: 108167926
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:100819265-100836692 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  438 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825932	lncRNA gene	Chr11:100819265-100836692 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  5
• Targeted
  2
• Genomic Mutations
  2 involving Gm46295
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  108167926

Representative Sequences			Length	Strain/Species
genomic	108167926	NCBI Gene Model | MGI Sequence Detail	17428	C57BL/6J
transcript	XR_004937078	RefSeq | MGI Sequence Detail	11684	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:50799 Liu P, et al., Embryonic lethality and tumorigenesis caused by segmental aneuploidy on mouse chromosome 11. Genetics. 1998 Nov;150(3):1155-68
• Latest
  J:232020 Ermakova O, et al., Sensitized phenotypic screening identifies gene dosage sensitive region on chromosome 11 that predisposes to disease in mice. EMBO Mol Med. 2011 Jan;3(1):50-66

TSS for Gm46295:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3673	Chr11:100829575-100829593 (+)	10,319 bp
Tssr104984	Chr11:100830683-100830697 (+)	11,425 bp
Tssr104985	Chr11:100830944-100830972 (+)	11,693 bp