Gm46412 Gene Detail

Summary

• Symbol
  Gm46412
• Name
  predicted gene, 46412

• Feature Type
  lncRNA gene
• IDs
  MGI:5826049
  NCBI Gene: 108168080
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:46878916-46890823 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  257 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826049	lncRNA gene	Chr13:46872485-46890823 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm46412
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  2

• Ensembl
  ENSMUSG00000120329 (Evidence)
• NCBI Gene
  108168080

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120329	Ensembl Gene Model | MGI Sequence Detail	11908	C57BL/6J
transcript	ENSMUST00000243401	Ensembl | MGI Sequence Detail	1235	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm46412:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119610	Chr13:46878736-46878748 (+)	-174 bp
Tssr119611	Chr13:46878922-46878947 (+)	19 bp
Tssr119612	Chr13:46889530-46889533 (+)	10,616 bp
Tssr119613	Chr13:46889579-46889614 (+)	10,681 bp