Gm46485 Gene Detail

Summary

• Symbol
  Gm46485
• Name
  predicted gene, 46485

• Feature Type
  lncRNA gene
• IDs
  MGI:5826122
  NCBI Gene: 108168201
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr14:122151386-122171670 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  724 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826122	lncRNA gene	Chr14:122151386-122171670 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  108168201

Representative Sequences			Length	Strain/Species
genomic	108168201	NCBI Gene Model | MGI Sequence Detail	20285	C57BL/6J
transcript	XR_001781471	RefSeq | MGI Sequence Detail	20188	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm46485:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127294	Chr14:122153566-122153573 (+)	2,184 bp
Tssr127295	Chr14:122166066-122166068 (+)	14,681 bp
Tssr127296	Chr14:122167090-122167096 (+)	15,707 bp
Tssr127297	Chr14:122168176-122168207 (+)	16,806 bp
Tssr127298	Chr14:122168328-122168339 (+)	16,948 bp