Gm46733 Gene Detail

Summary

• Symbol
  Gm46733
• Name
  predicted gene, 46733

• Feature Type
  lncRNA gene
• IDs
  MGI:5826370
  NCBI Gene: 108168743
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr2:34853162-34853323 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826370	lncRNA gene	Chr2:34852691-34853323 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm46733
  

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000121265 (Evidence)
• NCBI Gene
  108168743

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121265	Ensembl Gene Model | MGI Sequence Detail	162	C57BL/6J
transcript	ENSMUST00000247657	Ensembl | MGI Sequence Detail	162	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46733:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17441	Chr2:34851413-34851429 (+)	-1,741 bp
Tssr17442	Chr2:34851695-34851710 (+)	-1,459 bp
Tssr17443	Chr2:34851714-34851729 (+)	-1,440 bp
Tssr17444	Chr2:34851731-34851764 (+)	-1,414 bp
Tssr17445	Chr2:34851896-34851908 (+)	-1,260 bp
Tssr477	Chr2:34853174-34853179 (+)	15 bp
Tssr17446	Chr2:34853182-34853214 (+)	36 bp
Tssr17447	Chr2:34853218-34853227 (+)	61 bp