Gm46891 Gene Detail

Summary

• Symbol
  Gm46891
• Name
  predicted gene, 46891

• Feature Type
  lncRNA gene
• IDs
  MGI:5826528
  NCBI Gene: 108169008
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr4:41314342-41321287 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826528	lncRNA gene	Chr4:41314342-41321287 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  108169008

Representative Sequences			Length	Strain/Species
genomic	108169008	NCBI Gene Model | MGI Sequence Detail	6946	C57BL/6J
transcript	NR_168697	RefSeq | MGI Sequence Detail	3591	ZRU/MplStud

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm46891:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36854	Chr4:41314321-41314359 (+)	-2 bp
Tssr36855	Chr4:41314901-41314914 (+)	566 bp
Tssr36856	Chr4:41314922-41314970 (+)	604 bp
Tssr36857	Chr4:41316799-41316807 (+)	2,461 bp
Tssr36858	Chr4:41316809-41316830 (+)	2,478 bp
Tssr36859	Chr4:41316839-41316848 (+)	2,502 bp
Tssr36860	Chr4:41316855-41316861 (+)	2,516 bp