Rr40 Other Genome Feature Detail

Summary

• Symbol
  Rr40
• Name
  regulatory region 40
• Synonyms
  CNS1

• Feature Type
  enhancer
• IDs
  MGI:5829271
• Regulates expression of
  Aire (1 regulated gene)

Location &
Maps

• Sequence Map
  Chr10:77882379-77882423 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  0 strains or lines available

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:53196 Blechschmidt K, et al., The mouse Aire gene: comparative genomic sequencing, gene organization, and expression. Genome Res. 1999 Feb;9(2):158-66
• Latest
  J:275460 Yamano T, et al., Aire-expressing ILC3-like cells in the lymph node display potent APC features. J Exp Med. 2019 May 6;216(5):1027-1037

Rr40 regulates expression of:

Feature	Feature Type	Location	Reference
Aire, autoimmune regulator	protein coding gene	Chr10:77865856-77879444 (-)	J:53196