Gm47279 Gene Detail

Summary

• Symbol
  Gm47279
• Name
  predicted gene, 47279

• Feature Type
  miRNA gene
• IDs
  MGI:6096123
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:23447749-23447839 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096123	miRNA gene	Chr11:23447749-23447839 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007784	miRNA gene	Chr11:21256768-21256858 (-)
A/J	MGP_AJ_G0007780	miRNA gene	Chr11:20428963-20429053 (-)
AKR/J	MGP_AKRJ_G0007754	miRNA gene	Chr11:21155329-21155419 (-)
BALB/cJ	MGP_BALBcJ_G0007757	miRNA gene	Chr11:20567026-20567116 (-)
C3H/HeJ	MGP_C3HHeJ_G0007704	miRNA gene	Chr11:21038577-21038667 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007935	miRNA gene	Chr11:22115687-22115777 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007084	miRNA gene	Chr11:19323473-19323563 (-)
CAST/EiJ	MGP_CASTEiJ_G0007599	miRNA gene	Chr11:21071143-21071233 (-)
CBA/J	MGP_CBAJ_G0007676	miRNA gene	Chr11:23100410-23100500 (-)
DBA/2J	MGP_DBA2J_G0007711	miRNA gene	Chr11:20355061-20355151 (-)
FVB/NJ	MGP_FVBNJ_G0007728	miRNA gene	Chr11:20133400-20133490 (-)
LP/J	MGP_LPJ_G0007788	miRNA gene	Chr11:21354530-21354620 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007699	miRNA gene	Chr11:23627461-23627551 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007933	miRNA gene	Chr11:21271040-21271130 (-)
PWK/PhJ	MGP_PWKPhJ_G0007528	miRNA gene	Chr11:20401177-20401267 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007426	miRNA gene	Chr11:21021916-21022006 (-)
WSB/EiJ	MGP_WSBEiJ_G0007666	miRNA gene	Chr11:20906982-20907072 (-)

Homology

• Gene Tree
  Gm47279
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106362 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106362	Ensembl Gene Model | MGI Sequence Detail	91	C57BL/6J
transcript	ENSMUST00000197943	Ensembl | MGI Sequence Detail	91	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47279:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107128	Chr11:23447867-23447962 (-)	-76 bp