Gm47727 Pseudogene Detail

Summary

• Symbol
  Gm47727
• Name
  predicted gene, 47727

• Feature Type
  pseudogene
• IDs
  MGI:6096859
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr13:21012006-21012486 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096859	pseudogene	Chr13:21012006-21012486 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm47727
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000114070 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114070	Ensembl Gene Model | MGI Sequence Detail	481	C57BL/6J
transcript	ENSMUST00000221287	Ensembl | MGI Sequence Detail	481	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47727:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118629	Chr13:21010002-21010018 (+)	-1,996 bp
Tssr118630	Chr13:21010296-21010314 (+)	-1,701 bp
Tssr118631	Chr13:21010654-21010671 (+)	-1,343 bp
Tssr118632	Chr13:21010678-21010690 (+)	-1,322 bp
Tssr118633	Chr13:21011834-21011870 (+)	-154 bp