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Gm47854 Gene Detail
Summary
  • Symbol
    Gm47854
  • Name
    predicted gene, 47854
  • Feature Type
    lncRNA gene
  • IDs
    MGI:6097063
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr9:51532725-51566427 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    853 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_6097063
 lncRNA gene Chr9:51532725-51566427 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034801
 protein coding gene Chr9:50559581-50563470 (+)
A/J MGP_AJ_G0034782
 protein coding gene Chr9:49005825-49008322 (+)
AKR/J MGP_AKRJ_G0034710
 protein coding gene Chr9:50040672-50046645 (+)
BALB/cJ MGP_BALBcJ_G0034774
 protein coding gene Chr9:48764706-48768853 (+)
C3H/HeJ MGP_C3HHeJ_G0034484
 protein coding gene Chr9:50529582-50532590 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0033806
 protein coding gene Chr9:50492400-50494663 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0034556
 protein coding gene Chr9:48083983-48088992 (+)
LP/J MGP_LPJ_G0034696
 protein coding gene Chr9:50908854-50912276 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034599
 protein coding gene Chr9:55373367-55384364 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035315
 protein coding gene Chr9:50042274-50045232 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0033346
 protein coding gene Chr9:50316869-50319011 (+)
WSB/EiJ no annotation



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    14
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078308 Ensembl Gene Model | MGI Sequence Detail 33703 C57BL/6J ±  kb
transcript ENSMUST00000089534 Ensembl | MGI Sequence Detail 3549 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 1
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory