Gm49339 Gene Detail

Summary

• Symbol
  Gm49339
• Name
  predicted gene, 49339

• Feature Type
  protein coding gene
• IDs
  MGI:6121530
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:51356708-51372709 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  937 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121530	protein coding gene	Chr10:51356708-51372709 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017215	protein coding gene	Chr10:50602778-50614828 (+)
A/J	MGP_AJ_G0017190	protein coding gene	Chr10:49108897-49139766 (+)
AKR/J	MGP_AKRJ_G0017150	protein coding gene	Chr10:50036103-50054083 (+)
BALB/cJ	MGP_BALBcJ_G0017152	protein coding gene	Chr10:49227442-49246577 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0017610	protein coding gene	Chr10:52196374-52215812 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015304	protein coding gene	Chr10:46443174-46448604 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0016946	protein coding gene	Chr10:54454733-54491434 (+)
DBA/2J	MGP_DBA2J_G0017051	protein coding gene	Chr10:48548863-48578836 (+)
FVB/NJ	MGP_FVBNJ_G0017046	protein coding gene	Chr10:47911363-47916606 (+)
LP/J	MGP_LPJ_G0017126	protein coding gene	Chr10:50642707-50678528 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017074	protein coding gene	Chr10:56372386-56396544 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017646	protein coding gene	Chr10:49965905-49999031 (+)
PWK/PhJ	MGP_PWKPhJ_G0016329	protein coding gene	Chr10:48371367-48390402 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016113	protein coding gene	Chr10:49600864-49632573 (+)
WSB/EiJ	MGP_WSBEiJ_G0016613	protein coding gene	Chr10:50192019-50200832 (+)

Homology

• Gene Tree
  Gm49339
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000062593 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062593	Ensembl Gene Model | MGI Sequence Detail	16002	C57BL/6J
transcript	ENSMUST00000219696	Ensembl | MGI Sequence Detail	1441	Not Applicable
polypeptide	ENSMUSP00000151486	Ensembl | MGI Sequence Detail	335	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49339:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93232	Chr10:51356332-51356351 (+)	-366 bp