Gm49925 Pseudogene Detail

Summary

• Symbol
  Gm49925
• Name
  predicted gene, 49925

• Feature Type
  pseudogene
• IDs
  MGI:6270632
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr17:66312700-66313082 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270632	pseudogene	Chr17:66312700-66313082 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm49925
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000117074 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117074	Ensembl Gene Model | MGI Sequence Detail	383	C57BL/6J
transcript	ENSMUST00000233477	Ensembl | MGI Sequence Detail	383	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49925:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145589	Chr17:66312621-66312643 (+)	-68 bp
Tssr145590	Chr17:66312664-66312677 (+)	-29 bp
Tssr145591	Chr17:66312691-66312712 (+)	2 bp
Tssr145592	Chr17:66312736-66312749 (+)	43 bp