Gm51688 Gene Detail

Summary

• Symbol
  Gm51688
• Name
  predicted gene, 51688

• Feature Type
  lncRNA gene
• IDs
  MGI:6365463
  NCBI Gene: 115487190
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr9:106009511-106012550 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6365463	lncRNA gene	Chr9:106009511-106012550 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  115487190

Representative Sequences			Length	Strain/Species
genomic	115487190	NCBI Gene Model | MGI Sequence Detail	3040	C57BL/6J
transcript	XR_003948222	RefSeq | MGI Sequence Detail	543	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm51688:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91291	Chr9:106013596-106013600 (-)	-1,048 bp
Tssr91290	Chr9:106013574-106013588 (-)	-1,031 bp
Tssr91289	Chr9:106013564-106013572 (-)	-1,018 bp
Tssr91288	Chr9:106013557-106013561 (-)	-1,009 bp
Tssr91287	Chr9:106013248-106013267 (-)	-708 bp
Tssr91286	Chr9:106013213-106013218 (-)	-666 bp
Tssr91285	Chr9:106010827-106010834 (-)	1,719 bp
Tssr91284	Chr9:106010776-106010786 (-)	1,769 bp
Tssr91283	Chr9:106010712-106010718 (-)	1,835 bp