Gm51701 Gene Detail

Summary

• Symbol
  Gm51701
• Name
  predicted gene, 51701

• Feature Type
  lncRNA gene
• IDs
  MGI:6365489
  NCBI Gene: 115487206
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr9:123724374-123728739 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6365489	lncRNA gene	Chr9:123724374-123728739 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  115487206

Representative Sequences			Length	Strain/Species
genomic	115487206	NCBI Gene Model | MGI Sequence Detail	4366	C57BL/6J
transcript	NR_175889	RefSeq | MGI Sequence Detail	3153	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm51701:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3066	Chr9:123727517-123727551 (+)	3,160 bp
Tssr3067	Chr9:123727574-123727585 (+)	3,206 bp
Tssr3070	Chr9:123728221-123728244 (+)	3,859 bp
Tssr3071	Chr9:123728256-123728297 (+)	3,903 bp
Tssr3072	Chr9:123728327-123728345 (+)	3,962 bp
Tssr3073	Chr9:123728348-123728408 (+)	4,004 bp