Gm51814 Gene Detail

Summary

• Symbol
  Gm51814
• Name
  predicted gene, 51814

• Feature Type
  lncRNA gene
• IDs
  MGI:6365676
  NCBI Gene: 115487472
• Alliance
  gene page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr10:18938527-18945107 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6365676	lncRNA gene	Chr10:18938527-18945107 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  115487472

Representative Sequences			Length	Strain/Species
genomic	115487472	NCBI Gene Model | MGI Sequence Detail	6581	C57BL/6J
transcript	NR_168594	RefSeq | MGI Sequence Detail	631	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:295394 Ma S, et al., A long noncoding RNA, lincRNA-Tnfaip3, acts as a coregulator of NF-kappaB to modulate inflammatory gene transcription in mouse macrophages. FASEB J. 2017 Mar;31(3):1215-1225

TSS for Gm51814:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92516	Chr10:18937114-18937116 (+)	-1,412 bp
Tssr92517	Chr10:18938384-18938394 (+)	-138 bp
Tssr92518	Chr10:18938440-18938450 (+)	-82 bp
Tssr92519	Chr10:18938489-18938504 (+)	-30 bp
Tssr92520	Chr10:18938505-18938535 (+)	-7 bp
Tssr92521	Chr10:18938555-18938564 (+)	33 bp
Tssr92522	Chr10:18939520-18939528 (+)	997 bp
Tssr92523	Chr10:18941240-18941251 (+)	2,719 bp
Tssr92524	Chr10:18941253-18941258 (+)	2,729 bp
Tssr92525	Chr10:18941275-18941291 (+)	2,756 bp
Tssr92526	Chr10:18941361-18941367 (+)	2,837 bp
Tssr92527	Chr10:18943019-18943030 (+)	4,498 bp