Gm52092 Gene Detail

Summary

• Symbol
  Gm52092
• Name
  predicted gene, 52092

• Feature Type
  lncRNA gene
• IDs
  MGI:6366091
  NCBI Gene: 115488289
• Alliance
  gene page
• Transcription Start Sites
  16 TSS

Location &
Maps

• Sequence Map
  Chr14:55188497-55192424 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366091	lncRNA gene	Chr14:55188497-55192424 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  115488289

Representative Sequences			Length	Strain/Species
genomic	115488289	NCBI Gene Model | MGI Sequence Detail	3928	C57BL/6J
transcript	XR_003950992	RefSeq | MGI Sequence Detail	3633	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm52092:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125697	Chr14:55186884-55186913 (+)	-1,598 bp
Tssr125698	Chr14:55187354-55187367 (+)	-1,136 bp
Tssr125699	Chr14:55187374-55187396 (+)	-1,112 bp
Tssr125700	Chr14:55187498-55187520 (+)	-988 bp
Tssr125701	Chr14:55187562-55187585 (+)	-923 bp
Tssr125702	Chr14:55187980-55187998 (+)	-508 bp
Tssr125703	Chr14:55188034-55188074 (+)	-443 bp
Tssr125704	Chr14:55189738-55189756 (+)	1,250 bp
Tssr125705	Chr14:55190117-55190139 (+)	1,631 bp
Tssr125706	Chr14:55190481-55190535 (+)	2,011 bp
Tssr125707	Chr14:55190536-55190567 (+)	2,055 bp
Tssr125708	Chr14:55190740-55190793 (+)	2,270 bp
Tssr125709	Chr14:55190795-55190810 (+)	2,306 bp
Tssr125710	Chr14:55190840-55190869 (+)	2,358 bp
Tssr125711	Chr14:55190931-55190958 (+)	2,448 bp
Tssr125712	Chr14:55191372-55191382 (+)	2,880 bp