Gm52147 Gene Detail

Summary

• Symbol
  Gm52147
• Name
  predicted gene, 52147

• Feature Type
  lncRNA gene
• IDs
  MGI:6366197
  NCBI Gene: 115488369
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:30318587-30319514 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366197	lncRNA gene	Chr14:30318587-30319971 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm52147
  

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000120912 (Evidence)
• NCBI Gene
  115488369

Representative Sequences			Length	Strain/Species
genomic	115488369	NCBI Gene Model | MGI Sequence Detail	928	C57BL/6J
transcript	XR_003951217	RefSeq | MGI Sequence Detail	218	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52147:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124837	Chr14:30317943-30317959 (+)	-636 bp
Tssr124838	Chr14:30318598-30318616 (+)	20 bp