Gm52242 Gene Detail

Summary

• Symbol
  Gm52242
• Name
  predicted gene, 52242

• Feature Type
  lncRNA gene
• IDs
  MGI:6366343
  NCBI Gene: 115488634
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:74416915-74439618 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  843 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366343	lncRNA gene	Chr16:74416915-74439618 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm52242
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  115488634

Representative Sequences			Length	Strain/Species
genomic	115488634	NCBI Gene Model | MGI Sequence Detail	22704	C57BL/6J
transcript	XR_003951903	RefSeq | MGI Sequence Detail	306	C57BL/6J

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76

TSS for Gm52242:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139000	Chr16:74416919-74416927 (+)	8 bp
Tssr139001	Chr16:74416928-74416938 (+)	18 bp
Tssr139002	Chr16:74416947-74416957 (+)	37 bp