Gm52290 Gene Detail

Summary

• Symbol
  Gm52290
• Name
  predicted gene, 52290

• Feature Type
  lncRNA gene
• IDs
  MGI:6366412
  NCBI Gene: 115488777
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:21694079-21700882 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  203 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366412	lncRNA gene	Chr17:21694079-21700882 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm52290
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  115488777

Representative Sequences			Length	Strain/Species
genomic	115488777	NCBI Gene Model | MGI Sequence Detail	6804	C57BL/6J
transcript	XR_003952268	RefSeq | MGI Sequence Detail	2240	C57BL/6J

References

• Summaries
  All 18

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964

TSS for Gm52290:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142877	Chr17:21694105-21694128 (+)	38 bp
Tssr142878	Chr17:21694511-21694535 (+)	444 bp