Gm52296 Gene Detail

Summary

• Symbol
  Gm52296
• Name
  predicted gene, 52296

• Feature Type
  lncRNA gene
• IDs
  MGI:6366424
  NCBI Gene: 115488785
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr17:86535580-86564758 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1157 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366424	lncRNA gene	Chr17:86535580-86564758 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  115488785

Representative Sequences			Length	Strain/Species
genomic	115488785	NCBI Gene Model | MGI Sequence Detail	29179	C57BL/6J
transcript	XR_003952295	RefSeq | MGI Sequence Detail	28968	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm52296:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149734	Chr17:86537844-86537851 (-)	26,910 bp
Tssr149733	Chr17:86537812-86537839 (-)	26,932 bp
Tssr149732	Chr17:86537803-86537807 (-)	26,953 bp
Tssr149731	Chr17:86537776-86537789 (-)	26,975 bp
Tssr149730	Chr17:86537683-86537694 (-)	27,069 bp