Gm52399 Gene Detail

Summary

• Symbol
  Gm52399
• Name
  predicted gene, 52399

• Feature Type
  lncRNA gene
• IDs
  MGI:6366594
  NCBI Gene: 115489036
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr19:24455353-24479227 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  857 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366594	lncRNA gene	Chr19:24455353-24479227 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  115489036

Representative Sequences			Length	Strain/Species
genomic	115489036	NCBI Gene Model | MGI Sequence Detail	23875	C57BL/6J
transcript	XR_003952918	RefSeq | MGI Sequence Detail	10455	C57BL/6J

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm52399:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155618	Chr19:24454097-24454116 (+)	-1,246 bp
Tssr155619	Chr19:24454119-24454130 (+)	-1,228 bp
Tssr155620	Chr19:24454145-24454156 (+)	-1,202 bp
Tssr155621	Chr19:24454973-24454991 (+)	-371 bp
Tssr155622	Chr19:24478107-24478113 (+)	22,757 bp