Gm52552 Gene Detail

Summary

• Symbol
  Gm52552
• Name
  predicted gene, 52552

• Feature Type
  lncRNA gene
• IDs
  MGI:6366822
  NCBI Gene: 115489515
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr2:34841307-34874435 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1006 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366822	lncRNA gene	Chr2:34841307-34874435 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  115489515

Representative Sequences			Length	Strain/Species
genomic	115489515	NCBI Gene Model | MGI Sequence Detail	33129	C57BL/6J
transcript	XR_003954034	RefSeq | MGI Sequence Detail	1002	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm52552:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr475	Chr2:34847187-34847189 (+)	5,881 bp
Tssr476	Chr2:34848322-34848329 (+)	7,019 bp
Tssr17437	Chr2:34848330-34848347 (+)	7,032 bp
Tssr17438	Chr2:34848362-34848367 (+)	7,058 bp
Tssr17439	Chr2:34848867-34848881 (+)	7,567 bp
Tssr17440	Chr2:34851014-34851040 (+)	9,720 bp
Tssr17448	Chr2:34853706-34853721 (+)	12,407 bp
Tssr17449	Chr2:34853725-34853734 (+)	12,423 bp
Tssr17450	Chr2:34853882-34853898 (+)	12,583 bp
Tssr478	Chr2:34866670-34866686 (+)	25,371 bp
Tssr17451	Chr2:34866709-34866720 (+)	25,408 bp